Stratum adjusted correlation coefficient
Web4 Aug 2024 · We present HiCRep, a framework for assessing the reproducibility of Hi-C data that systematically accounts for these features. In particular, we introduce a novel … Web13 Apr 2024 · In this paper, a GPU-accelerated Cholesky decomposition technique and a coupled anisotropic random field are suggested for use in the modeling of diversion tunnels. Combining the advantages of GPU and CPU processing with MATLAB programming control yields the most efficient method for creating large numerical model random fields. Based …
Stratum adjusted correlation coefficient
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Web4 Aug 2024 · A novel similarity measure, the stratum adjusted correlation coefficient (SCC), is introduced, for quantifying the similarity between Hi-C interaction matrices, and … WebThe reproducibility of HiChIP was confirmed by the score of stratum-adjusted correlation coefficients (Yang et al., 2024. Yang T. Zhang F. Yardımcı G.G. Song F. Hardison R.C. …
WebHiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient. Genome research 2024-08 Journal article DOI: 10.1101/gr.220640.117 PMID: … WebWhen nonparametric (RANK or RIDIT) scores are specified, then the statistic reduces to (n-1)r s 2, where r s is the Spearman rank correlation coefficient between X and Y. When …
WebHow to make adjustment for correlation coefficient? Suppose that there are two two-dimensional maps. For simplification, let's say one map is the temperatures in the 48 … Web1 Mar 1999 · Europe PMC is an archive of life sciences journal literature. Estimation of the average correlation coefficient for stratified bivariate data.
Web13 May 2024 · It is a number between –1 and 1 that measures the strength and direction of the relationship between two variables. Pearson correlation coefficient ( r) Correlation …
Web(E) The model-inferred contact matrix of chromosome 20 has a Pearson, distance-corrected Pearson, and stratum-adjusted correlation with Hi-C respectively equal to r = 0.97, r′ = … lam slimeWeb7 Feb 2024 · Stratum-adjusted correlation coefficients (SCC) were calculated for each pair of replicates (same- or cross-enzyme) on Hi-C contact matrices estimated by four … jet audio speakersWeb10 Apr 2024 · INTRODUCTION. Obesity is a chronic disease and an independent risk factor for many major diseases [()].Over the past 30 years, the prevalence of overweight as well as general and central obesity has soared in both men and women globally and in China [(2-4)].Unhealthy dietary habits are a well-established risk factor for obesity [()].Dietary … jet audio pro mod apkWeb5 May 2024 · To check the similarities of the Hi-C interaction matrices between these tissues, we performed a stratum-adjusted correlation coefficient (SCC) method using the HiCRep 24 tool. As expected, we ... lam slamWebWe confirmed that biological replicates were highly correlated (stratum-adjusted correlation coefficient [SCC] > 0.94) at 10-kb resolution using HiCRep ... compartment calls for each … lams market tukwilaWeb4 Aug 2024 · We present HiCRep, a framework for assessing the reproducibility of Hi-C data that systematically accounts for these features. In particular, we introduce a novel similarity measure, the stratum... jet audio skinsWeb8 Apr 2024 · To quantitatively evaluate the performances of the three models, we used four metrics, including Pearson correlation coefficient, the stratum adjusted correlation … lams meaning